nf-core / rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
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RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Repository to host tool-specific module files for the Nextflow DSL2 community!
Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
Pipeline for identifying, annotation, and quantifying phage sequences in (meta)-genomic sequences.
Nanopore demultiplexing, QC and alignment pipeline