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nf-core-configs Public
Forked from nf-core/configsConfig files used to define parameters specific to compute environments at different Institutions.
Nextflow MIT License UpdatedJun 14, 2024 -
nf-core-airrflow Public
Forked from nf-core/airrflowPlease use the original pipeline http://github.com/nf-core/airrflow
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bcr-phylo-simulation Public
Forked from matsengrp/bcr-phylo-benchmarkFork of matsengrp/bcr-phylo-benchmark
Jupyter Notebook GNU General Public License v3.0 UpdatedMay 12, 2024 -
multi-package-containers Public
Forked from BioContainers/multi-package-containersTesting building mulled containers for multi-requirement tools.
UpdatedMar 8, 2024 -
nf-core-test-datasets Public
Forked from nf-core/test-datasetsTest data to be used for automated testing with the nf-core pipelines
MIT License UpdatedFeb 14, 2024 -
nf-core-modules Public
Forked from nf-core/modulesRepository to host tool-specific module files for the Nextflow DSL2 community!
Nextflow MIT License UpdatedFeb 3, 2024 -
nf-core-website Public
Forked from nf-core/websiteCode and files for the main nf-core website >>>
PHP MIT License UpdatedNov 22, 2023 -
bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedOct 12, 2023 -
nf-core-mag Public
Forked from nf-core/magAssembly and binning of metagenomes
Nextflow MIT License UpdatedJul 7, 2023 -
epitopeprediction Public
Forked from nf-core/epitopepredictionA bioinformatics best-practice analysis pipeline for epitope prediction and annotation
Nextflow MIT License UpdatedMar 16, 2023 -
pipeline-docs Public
Forked from qbic-pipelines/pipeline-docsDocs for QBiC pipelines
UpdatedMar 9, 2023 -
root-tissue-analysis Public
Forked from qbic-pipelines/root-tissue-analysisPipeline for pH analysis of A. thaliana root tissue
UpdatedFeb 2, 2023 -
nf-core-differentialabundance Public
Forked from nf-core/differentialabundancenf-core differentialabundance fork
Nextflow MIT License UpdatedJan 24, 2023 -
nf-core-tools Public
Forked from nf-core/toolsPython package with helper tools for the nf-core community.
Python MIT License UpdatedNov 28, 2022 -
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tower-action Public
Forked from nf-core/tower-actionGitHub Action to launch a workflow using Nextflow Tower.
Shell MIT License UpdatedSep 6, 2022 -
nf-core-sarek Public
Forked from nf-core/sarekAnalysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Nextflow MIT License UpdatedJul 20, 2022 -
nf-core-scrnaseq Public
Forked from nf-core/scrnaseqA single-cell RNAseq pipeline for 10X genomics data
Nextflow MIT License UpdatedJun 16, 2022 -
cellranger Public
Forked from qbic-pipelines/cellrangerUNDER CONSTRUCTION: Nextflow pipeline for executing Cell Ranger
Nextflow MIT License UpdatedMar 8, 2022 -
modlAMP Public
Forked from alexarnimueller/modlAMPPython package for peptide sequence generation, peptide descriptor calculation and sequence analysis.
Python Other UpdatedFeb 15, 2022 -
r-alakazam-feedstock Public
Forked from conda-forge/r-alakazam-feedstockA conda-smithy repository for r-alakazam.
Shell BSD 3-Clause "New" or "Revised" License UpdatedDec 22, 2021 -
nf-core-testpipeline Public
Forked from nf-core/testpipelineA small example pipeline used to test new nf-core infrastructure and common code.
Nextflow MIT License UpdatedDec 15, 2021 -
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compsi-commons-qc-benchmark-action Public
Forked from compsci-commons/qc-benchmark-actionA generic github action for conducting scientific QC benchmarks.
JavaScript MIT License UpdatedSep 3, 2021 -
r-project-template Public
Forked from qbic-projects/r-project-templateR project template
Shell MIT License UpdatedAug 30, 2021 -
metadata-model-specification Public
Forked from qbicsoftware/metadata-model-specificationQBiC's metadata model specification
Groovy MIT License UpdatedJul 13, 2021 -
mlf-core Public
Forked from mlf-core/mlf-coreCPU and GPU deterministic and therefore fully reproducible machine learning pipelines using MLflow.
Python Other UpdatedMay 31, 2021