Skip to content
@SysBioChalmers

Systems and Synthetic Biology at Chalmers University of Technology

Pinned

  1. Human-GEM Human-GEM Public

    The generic genome-scale metabolic model of Homo sapiens

    MATLAB 88 40

  2. yeast-GEM yeast-GEM Public

    The consensus GEM for Saccharomyces cerevisiae

    MATLAB 89 42

  3. RAVEN RAVEN Public

    The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.

    MATLAB 97 52

  4. GECKO GECKO Public

    Toolbox for including enzyme constraints on a genome-scale model.

    MATLAB 63 44

  5. DLKcat DLKcat Public

    Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic models (ecGEMs) reconstruction

    Python 117 51

Repositories

Showing 10 of 100 repositories
  • Human-GEM Public

    The generic genome-scale metabolic model of Homo sapiens

    SysBioChalmers/Human-GEM’s past year of commit activity
    MATLAB 88 CC-BY-4.0 40 73 6 Updated Jun 20, 2024
  • Yarrowia_Multifactor Public

    Data and scripts used for the RNA-seq analysis of Yarrowia lipolytica (fat-free strain and urea utilisation)

    SysBioChalmers/Yarrowia_Multifactor’s past year of commit activity
    MATLAB 1 MIT 1 0 0 Updated Jun 17, 2024
  • RAVEN Public

    The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.

    SysBioChalmers/RAVEN’s past year of commit activity
    MATLAB 97 52 7 1 Updated Jun 13, 2024
  • sysbio.se Public

    The sysbio.se source code

    SysBioChalmers/sysbio.se’s past year of commit activity
    CSS 0 MIT 2 1 0 Updated Jun 11, 2024
  • GECKO Public

    Toolbox for including enzyme constraints on a genome-scale model.

    SysBioChalmers/GECKO’s past year of commit activity
    MATLAB 63 MIT 44 10 1 Updated Jun 8, 2024
  • yeast-GEM Public

    The consensus GEM for Saccharomyces cerevisiae

    SysBioChalmers/yeast-GEM’s past year of commit activity
    MATLAB 89 CC-BY-4.0 42 31 (6 issues need help) 0 Updated May 23, 2024
  • BrainMetabolismModeling Public

    Modeling of the energy metabolism of the brain

    SysBioChalmers/BrainMetabolismModeling’s past year of commit activity
    MATLAB 2 MIT 0 0 0 Updated Jan 14, 2024
  • hanpo-GEM Public

    Draft genome-scale model of Hansenula polymorpha (Ogataea polymorpha; Pichia angusta)

    SysBioChalmers/hanpo-GEM’s past year of commit activity
    MATLAB 4 CC-BY-4.0 1 1 0 Updated Jan 5, 2024
  • GEMsforTrophicLevels Public
    SysBioChalmers/GEMsforTrophicLevels’s past year of commit activity
    HTML 0 2 0 0 Updated Dec 19, 2023
  • Worm-GEM Public

    Genome-scale model for Caenorhabditis elegans

    SysBioChalmers/Worm-GEM’s past year of commit activity
    MATLAB 2 CC-BY-4.0 1 0 0 Updated Dec 10, 2023
View all repositories

Top languages

Loading…

Most used topics

Loading…