This repository contains custom scripts and workflow notes for "Highly-accurate long-read sequencing improves variant detection and assembly of a human genome" (https://doi.org/10.1101/519025).

• giabcuration - scripts for "Revising and Expanding Genome in a Bottle Benchmarks" section.
• phasing - scripts for "Phasing Small Variants with CCS Reads" section.
• smallvariants - scripts and workflows for "Small Variant Detection with CCS Reads" section.

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