Table 1 DeepNull improves association results relative to the Baseline model on ten phenotypes from the UK Biobank.

Pheno	n	#Hits		%Improve	#Loci		%Improve
		Baseline	DeepNull		Baseline	DeepNull
ALP	416,232	1697	1759	3.65%	336	350	4.17%
ALT	416,057	371	379	2.16%	173	174	0.58%
AST	414,743	337	351	4.15%	137	145	5.84%
ApoB	414,639	1172	1219	4.01%	200	217	8.50%
Calcium	381,934	726	739	1.79%	272	281	3.31%
GRP	65,896	28	38	35.71%	26	38	46.15%
LDL	415,892	950	993	4.53%	193	202	4.66%
Phosphate	381,362	658	664	0.91%	224	229	2.23%
SHBG	378,459	1084	1120	3.32%	319	323	1.25%
TG	416,295	1221	1254	2.70%	261	266	1.92%
Avg.	370,151	824.4	851.6	6.29%	214.1	222.5	7.86%

n is the sample size, hits refers to the number of independent genome-wide significant associations detected, and loci is the number of independent regions after merging hits within 250 kb. Bold values in the table indicate the best results.
Phenotypic abbreviations: ALP alkaline phosphatase, ALT alanine aminotransferase, AST aspartate aminotransferase, ApoB Apolipoprotein B, GRP glaucoma referral probability, LDL low-density lipoprotein, SHBG sex hormone-binding globulin, TG triglycerides.

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