Published June 17, 2022
| Version giraffe-dv-dt-hprcy1
Software
Open
github.com/vgteam/vg_wdl/GiraffeDeepTrio
Creators
Description
Core VG Giraffe mapping and DeepTrio calling workflow for maternal-paternal-child sample datasets. It takes as inputs reads in FASTQ and graphs containing the population-based haplotypes to genotype. The graphs files required include the XG, GCSA, GBWT, graph GBWT, Distance and Minimizer indexes. It outputs a VCF file and BAM file for the child along with optional RTG and hap.py vcf evaluation if the user provides benchmark truth-set VCFs.
Files
github.com-vgteam-vg_wdl-GiraffeDeepTrio_giraffe-dv-dt-hprcy1.zip
Files
(20.3 kB)
| Name | Size | Download all |
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md5:2f773ba879d3225b5ce1ab2a23e85329
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20.3 kB | Preview Download |
Additional details
Related works
- Is identical to
- https://dockstore.org/aliases/workflow-versions/10.5281-zenodo.6655962 (URL)
- https://dockstore.org/workflows/github.com/vgteam/vg_wdl/GiraffeDeepTrio:giraffe-dv-dt-hprcy1 (URL)
- https://dockstore.org/api/api/ga4gh/v2/tools/%23workflow%2Fgithub.com%2Fvgteam%2Fvg_wdl%2FGiraffeDeepTrio/versions/giraffe-dv-dt-hprcy1/PLAIN-WDL/descriptor/giraffe_and_deeptrio.wdl (URL)